Huxelerate Standard Library
Accelerated functions setup
Accelerated functions
Sequence aligner (smith_waterman)
Signal aligner (dynamic_time_warping)
ksw2s aligner (ksw2_score)
ksw2c aligner (ksw2_cigar)
Huxelerate Standard Library
Docs
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Index
Index
H
H
hugenomic (C++ type)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
hugenomic::dtw_all_to_all (C++ function)
hugenomic::dtw_batch (C++ function)
hugenomic::dtw_distance_function (C++ enum)
hugenomic::dtw_euclidean (C++ enumerator)
hugenomic::DTW_MAX_SEQUENCE_SIZE (C++ member)
hugenomic::DTW_MAX_SIZE_OF_SMALLER_SEQUENCE (C++ member)
hugenomic::dtw_response (C++ class)
hugenomic::dtw_response::alignment_distance (C++ member)
hugenomic::dtw_response::horizontal_sequence_end_position (C++ member)
hugenomic::dtw_response::horizontal_sequence_start_position (C++ member)
hugenomic::dtw_response::vertical_sequence_end_position (C++ member)
hugenomic::dtw_response::vertical_sequence_start_position (C++ member)
hugenomic::dtw_squared_euclidean (C++ enumerator)
hugenomic::dynamic_time_warping (C++ enumerator)
hugenomic::fpga_configure (C++ function)
hugenomic::fpga_release (C++ function)
hugenomic::get_available_fpgas (C++ function)
hugenomic::hugenomic_core (C++ enum)
hugenomic::invalid_fpga_configuration (C++ class)
hugenomic::invalid_fpga_configuration::invalid_fpga_configuration (C++ function)
hugenomic::invalid_fpga_identifier (C++ class)
hugenomic::invalid_fpga_identifier::invalid_fpga_identifier (C++ function)
,
[1]
,
[2]
hugenomic::invalid_worker_identifier (C++ class)
hugenomic::invalid_worker_identifier::invalid_worker_identifier (C++ function)
,
[1]
hugenomic::ksw2_cigar (C++ enumerator)
hugenomic::ksw2_score (C++ enumerator)
hugenomic::ksw2c_batch (C++ function)
hugenomic::ksw2c_cigar_op (C++ type)
hugenomic::ksw2c_get_cigar_op_length (C++ function)
hugenomic::ksw2c_get_cigar_op_type (C++ function)
hugenomic::KSW2C_MAX_NOT_FOUND (C++ member)
hugenomic::KSW2C_MAX_SCORING_MATRIX_SIZE (C++ member)
hugenomic::KSW2C_MAX_SEQUENCE_SIZE (C++ member)
hugenomic::ksw2c_response (C++ class)
hugenomic::ksw2c_response::cigar (C++ member)
hugenomic::ksw2c_response::extension_max_score (C++ member)
hugenomic::ksw2c_response::extension_query_end_position (C++ member)
hugenomic::ksw2c_response::extension_target_end_position (C++ member)
hugenomic::ksw2c_response::global_max_score (C++ member)
hugenomic::ksw2c_response::global_query_cigar (C++ member)
hugenomic::ksw2c_response::global_query_max_score (C++ member)
hugenomic::ksw2c_response::global_query_target_end_position (C++ member)
hugenomic::ksw2c_response::global_target_max_score (C++ member)
hugenomic::ksw2c_response::global_target_query_end_position (C++ member)
hugenomic::ksw2c_response::zdropped (C++ member)
hugenomic::ksw2s_batch (C++ function)
hugenomic::KSW2S_MAX_NOT_FOUND (C++ member)
hugenomic::KSW2S_MAX_SCORING_MATRIX_SIZE (C++ member)
hugenomic::KSW2S_MAX_SEQUENCE_SIZE (C++ member)
hugenomic::ksw2s_response (C++ class)
hugenomic::ksw2s_response::extension_max_score (C++ member)
hugenomic::ksw2s_response::extension_query_end_position (C++ member)
hugenomic::ksw2s_response::extension_target_end_position (C++ member)
hugenomic::ksw2s_response::global_max_score (C++ member)
hugenomic::ksw2s_response::global_query_max_score (C++ member)
hugenomic::ksw2s_response::global_query_target_end_position (C++ member)
hugenomic::ksw2s_response::global_target_max_score (C++ member)
hugenomic::ksw2s_response::global_target_query_end_position (C++ member)
hugenomic::ksw2s_response::zdropped (C++ member)
hugenomic::MAX_NUM_FPGA_PER_INSTANCE (C++ member)
hugenomic::smith_waterman (C++ enumerator)
hugenomic::sw_all_to_all (C++ function)
hugenomic::sw_batch (C++ function)
hugenomic::SW_MAX_SEQUENCE_SIZE (C++ member)
hugenomic::SW_MAX_SIZE_OF_SMALLER_SEQUENCE (C++ member)
hugenomic::sw_response (C++ class)
hugenomic::sw_response::alignment_score (C++ member)
hugenomic::sw_response::horizontal_sequence_end_position (C++ member)
hugenomic::sw_response::horizontal_sequence_start_position (C++ member)
hugenomic::sw_response::vertical_sequence_end_position (C++ member)
hugenomic::sw_response::vertical_sequence_start_position (C++ member)